Dr. Ruchika Bhat comments

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                                            Dr. Ruchika Bhat

Monocle function not working:plot_cell_clusters

Hi, I have also encountered the following error: `FibroMono

plot_pseudotime_heatmap not working in Monocle3

Hi all, I am using pseudotime analysis for the first time for mouse scRNA data and have encountered the following error: `FibroMono

plot_genes_branched_pseudotime and beam not working

Hi, I solved using the method given by @zy-fang. Thanks for the help. However just after the ordercell I had to run plot_cell_trajectory(cds_subset) which gave me the following error: rror...

Plot cell_metadata along pseudotime

Hi, I am using pseudotime analysis fr the first time for mouse scRNA data and have encountered the following error: FibroMono plot_cell_trajectory(FibroMono, + color_by = "Clusters", + theta = -15,...

Different trajectory plots in different runs

@drroya ,which tutorial you followed. Could you shae the code or link of the tutorial.

Different trajectory plots in different runs

Please let me know the tutorial link or attach the code

Plot genes in pseudo time with Seurat

Hi, I am using pseudotime analysis for the first time for mouse scRNA data and have encountered the following error: `FibroMono