Roxanna KL

Dear developers, I have this plot. Based on the R2, I don't think I should feel worried but the plot looks very odd. There seems to be some strand ambiguities....

Problem of .dose.vcf.gz files as input for bcftools for annotation purposes

1

Hi, I am trying to use bcftools to annotate the chromosome:position with rsids. Normally, this code should work with .vcf.gz files but it doesn't and reports the following error "...

Hi, In the read me in the ABCD release 2 folder, it says that there 527,285 SNPs after QC but when I check ABCD_release_2.0.1_r1 bim file it only has 517,724....