Bob Settlage
Bob Settlage
In some cases, it would be even more beneficial to completely de-couple these two steps. On our system, we can span more cores/nodes on the CPU side through different HPC...
I should have added some details. In our system, for the CPU queues, I can span 64 nodes each having 128 cores (cost factor=0.0023/core). On the GPU side, I am...
It would be nice if the OS info included distribution. This is more important with the use of containers where the libraries could be stored on the host and multiple...
That is perfect, minus the spaces.
Add to this annoyance. In cases where the the first path on the list is not writable, look to second etc. For instance, in the below case, the first two...
Right, not a great setup. This is totally unintentional and I am not sure what order is wrong. This is an artifact of me trying to handle use cases on...
Yes, both `R_LIBS` and `R_LIBS_SITE` live in the container and are not writable. Outside the container, I have to deal with the possibility that users have an `.Renviron` file set...
I should also mention, this particular container is made for Rstudio, if I start Rstudio the order is as expected. If I `singularity exec ... R` it is backwards. ```...
FYI, I do the section in the docs that says the default is 4, I am more curious where that is set when the values I see in the config...
Thanks, awesome information. I am indeed on an HPC system. I think I have settled on running each sample independently and am hoping the cluster option scales the various steps...