Rebecca Senft
Rebecca Senft
Hi! I'm trying to use cellpose 2.0 on a mac. For me, the contrast adjustment bar doesn't appear to exist: And I can't select the higher flag and move it...
If some wells have an empty string for an annotation, they show up in filtering as an invisible row with an invisible (but still clickable) checkbox. Below is an example...
When filtering a dataset based on row/column titles, the window does not adjust to length of the name correctly. The name seems to become two lines and becomes unreadable (example...
**Is your feature request related to a problem? Please describe.** The TrackObjects image output is really really important to deciding whether your tracking is good enough, but as it is...
**Describe the bug** If you have a primary object (nucleus) the same size as your secondary object (cytoplasm) and then make tertiary objects from their difference (WITH option Shrink smaller...
**Describe the bug** @bethac07 and I found this error when working with a fresh source installation Tifffile 4.22.2022 + removes support for `compress` keyword. Throws an error if you try...
The way threshold.py currently deals with images where all pixels have the same intensity is [to threshold inclusive of this intensity](https://github.com/CellProfiler/CellProfiler/blob/30a787144414e364dbe9e02e0b0f74d7884cad97/cellprofiler/modules/threshold.py#L903-L904). If the image is all 1s, they stay 1s...
**Describe the bug** In FilterObjects, you can optionally relabel an additional object set to match the filtered set to keep relationships between parents/children (e.g., cells and nuclei) consistent. When I...
@bethac07 **Is your feature request related to a problem? Please describe.** I can't run all images through my pipeline at once without using distributed cell profiler as the GPU (16...
**Describe the bug** 1) When working with a 3D z-stack, the FindMaxima module cannot display output, giving an error "Incorrect image size (size array)". Does work if display is muted...