Rasmus Rydbirk

Enable cell distance calculation for large datasets

1

Circumvents armaCor error: error: Mat::init(): requested size is too large

Job output not exported: 'file' must be non-empty string

6

Thank you for an amazing tool that really speeds up everyday work! Unfortunately, lately I've been experiencing issues where I get this error message: ``` Error in save(list = ls(envir...

``` cao$estimateMetadataSeparation(space = "foo") Error in match.arg(space) : 'arg' should be one of “expression.shifts”, “coda”, “pseudo.bulk” ``` but ``` cao$estimateMetadataSeparation(sample.meta = meta, space = "pseudo.bulk") Error in self$getSampleDistanceMatrix(space = space,...

GPU not utilized correctly, slower than CPU

2

I'm running the same data side-by-side on 32 CPU node and a 12 CPU / 1 A100 GPU node. It seems the GPU node is ~1 s/it slower than the...

Continuous pancreas notebook not reproducible

3

I just downloaded and ran the entire notebook for pancreas using the continuous model and CPUs instead of GPU. The velocities are reversed.  Complete notebook as PDF: [veloVAE_panc… -...