Rory Kirchner
Rory Kirchner
Hi Courtney, Does the directory "output" ever get made?
Sweet, thanks Yarden.
Hi Yarden, @lpantano and I were talking about how to do biological replicates downstream. You're smarter than we are, do you have any suggestions other than the ones we came...
Hi Yarden, I think adding the /usr/bin/env -E to the top does inject the python-that-installed MISO there. Without it, the path doesn't seem to be added. On a fresh vagrant...
Congraulations on your defense. :)
Just a note, the index_gff file doesn't get overwritten if you already installed MISO, so you have to manually remove it and install it if you want to see the...
Hi Yarden, Thanks for responding, sorry to be a pain in the neck. The repository on pip is a version behind and I think the 0.5.0 version uses the index_gff...
Hi Yarden, Confirmed, index_gff.py got the shebang, just index_gff was not getting it set properly.
Hi Musatafa, It is very common to have a high intronic rate with FFPE data, so the numbers you are seeing are not totally unexpected. See https://paperpile.com/shared/T1F0nA figure 4 for...
Hi Rob, Could I get in on this? We have a couple projects needing to call fusions on a large amount of samples, and it would be great to have...