Romain Lopez

icon indicating a website link https://romain-lopez.github.io/

icon company @Genentech & @Stanford icon location I am a joint postdoctoral scholar at Stanford University and Genentech Research and Early Development, hosted by Jonathan Pritchard and Aviv Regev

Results 3 issues of Romain Lopez

Interaction with AnnData

6 comment

I am trying to work outside of python command line and more in interaction with AnnData / scanpy. I am tempted to fork this package and patch it to make...

TensorFlow implementation of scVI

Hi Valentine, Thank you so much for your interest in scVI and for your blog article. The comparison is very interesting and valuable. I'd like to make a few comments:...

train.py has memory error

totalMemory: 11.17GiB freeMemory: 11.10GiB 2019-04-16 22:05:57.029810: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1435] Adding visible gpu devices: 0 2019-04-16 22:05:57.964097: I tensorflow/core/common_runtime/gpu/gpu_device.cc:923] Device interconnect StreamExecutor with strength 1 edge matrix: 2019-04-16 22:05:57.964139: I tensorflow/core/common_runtime/gpu/gpu_device.cc:929] 0...