Rolf Schröder

How to use the same samplesheet (containg relativ paths) for both nextflow & nf-test?

4

Hi, I have a samplesheet that contains the paths to test data relative to the project root directory (i.e. `./tests/fastq.fq`). This can be fed into `nextflow` just fine. I cannot...

Motif count number in MC tag not obvious from the alt sequence

2

Hi, I have the following call (checked with 1.0.0 & 1.5.1): ``` chr9 69037261 . TAAAAAATACAAAAAAAAAAAAAAAAGAAGAAGAAGAAGAAGAA TAAAAAATACAAAAAAAAAAAAAAAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAA,TAAAAAATACAAAAAAAAAAAAAAAAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAA 0 . TRID=FXN;END=69037304;MOTIFS=A,GAA;STRUC=(A)n(GAA)n GT:AL:ALLR:SD:MC:MS:AP:AM 1/2:83,84:78-85,79-87:17,16:26_19,27_19:0(0-26)_1(26-83),0(0-27)_1(27-84):0.975904,0.97619:.,. ``` The corresponding repeat is ``` chr9 69037261...

Fix disable autoformatting

1

This PR attempts to fix #91. This is done by renaming the user-defined `conform.nvim` functions `FormatEnable/Disable/Toggle` to `ConformFormatEnable/Disable/Toggle`. Doing so allows to access _other_ functions named `Format...` which are provided...

Disabling autoformat doesn't work

5

Hi, I believe the `FormatDisable` / `FormatEnable` [commands](https://github.com/dc-tec/nixvim/blob/main/config/plugins/lsp/conform.nix#L13-L41) do not work. After executing `:FormatDisable`, the buffer still gets formatted. However, `:lua vim.g.disable_autoformat=true` allows to correctly disable formatting (as [expected](https://github.com/dc-tec/nixvim/blob/main/config/plugins/lsp/conform.nix#L48)). I'm...