Roger Trullo

Results 16 comments of Roger Trullo

> Hi @rogertrullo, have you found the answer? Hi @diyar-m although I never got a reply, I assumed it was a bug. I made some mods to the code but...

Great! Let me know how it went once you have it :)

I dont have the code at hand now, but yeah the thing is that the `transform `expects individial images and not a batch of images, I cant remember exactly how...

yeah I think I did the same with a map or sth but escentially the same

This might be late, but I made an implementation to compute the RF numerically. Here it is: https://github.com/rogertrullo/Receptive-Field-in-Pytorch

Hi @MohitLamba94 other than the prints, the code should work in python 3 I think. Are you having any other issues ? Thanks!

@vqdang @John-P this seems related to https://github.com/TissueImageAnalytics/tiatoolbox/issues/452, if so, maybe we can include the fix on resolution reading in this PR

I am also having some issues when reading at different pyramid levels: I think (but I am not sure) that these lines: https://github.com/TissueImageAnalytics/tiatoolbox/blob/b3ace851ac61cbeee1f382b33925d8a9b0a1be55/tiatoolbox/wsicore/wsireader.py#L3505-L3521 should look like this (use level location...

@shaneahmed , @John-P , when reading at a different resolution other than the baseline, I have some errors. For example, when reading CMU-1-SMALL-REGION (which I converted to ome.tiff using `bioformats2raw...

@John-P @shaneahmed , another small issue I have seen, is that when reading metadata in here: https://github.com/TissueImageAnalytics/tiatoolbox/blob/b0d59811f67b5439571473e9e40b5a9bb27f8e3b/tiatoolbox/wsicore/wsireader.py#L3291-L3296 for an ome.tiff file `self.tiff.is_ome` and `self.tiff.pages[0].is_tiled` are both `True`. Since we are...