robertzeibich

I made some progress. I first used the provided cnvkit files, but then I thought of a more customized approach: 1. I created a target_chr.bed file, which includes the genomic...

It took me awhile to get back. I am following now a different approach (comparing the output against other SVs/CNVs methods): 1. BATCH `cnvkit.py batch ${BAM} -n --method wgs -f...

I visualized the fold change vs length and fold change log vs length now (please see my previous response for the steps).   Can I use more than 0.5...

I got the following output for the following region: mosdepth-test-out.regions.bed.gz `chr1 11869 12227 78.96` Is 78.96 good? Goal: I am just trying to generate some extra information to interpret/filter my...

You should have a look into the pihat_min0.2.genome file to observe conflictions. Once you know the samples thatare highly related, you want to remove the one, which has the higher...

Hi John, Do you think your finding could also fix my problem (https://github.com/bwa-mem2/bwa-mem2/issues/233)? Should I turn off multi-threading? I think my problem also aligns with what was posted here: https://github.com/bwa-mem2/bwa-mem2/issues/227....

Thanks for the quick response. Is there a range when the tool is most reliable or do you have a recommendation?

Thanks. These numbers are not easy to find. Could also be added to the introduction section.

Thank you for getting back to me. I am working on a cluster, but I also have Ubuntu on my windows machine. I installed fmt on my local machine (sudo...

Hi Egor, Where can I find your pre-built binary and how can I install it? Regards, Robert From: Egor Dolzhenko ***@***.***> Sent: Thursday, 2 December 2021 3:09 PM To: Illumina/REViewer...