Rob Patro
Rob Patro
Hi, I'm very interested in using edlib in some of the projects we're working on. One feature that would be great to have is the ability to build an alignment...
Hi Guillaume, I'm encountering the following _very_ strange issue. I'm using a hash_counter inside a function to maintain counts for some k-mers and everything is working great. Until the point...
Hi Guillaume, We have a number of Sailfish and Salmon users asking for us to directly support gzipped fasta/q files. Right now, the only way to achieve this online (i.e....
Hi @greg7mdp, Thanks again for both sparsepp and parallel-hashmap! I wanted to report a (fairly verbose) compiler warning I get when using sparsepp within some of our code. Specifically, I...
Thanks for the very nice library! I'm interested in using hora for doing nearest neighbor finding in single-cell genomics. The data of interest consist of very high dimensional points (D...
Hi, First, thank you for your work on the excellent TBB library. We've been using it in some of the software in our lab for a number of years and...
Hi @lh3, My student Mohsen and I are using minimap2's ksw2 library in a few projects, and we noticed some behavior that I think is unexpected/undefined. He posted an issue...
Hi, First, thank you all for htslib. This is an amazing resource and incredibly useful library. I have a project that includes uses both libbwa and libhts. However both of...
Hi @lh3, It would be very useful to us to have support in ksw2 for "infix" or "fitting" alignment, where they query aligns within the target, but the precise starting...
### Summary The feature would allow setting the underlying HashMap (or at least the Hasher) used in the GraphMap. This would allow using a deterministically seeded hash function to fix...