Ross Markello
Ross Markello
@Shotgunosine and I have been working on updating and adding various AFNI interfaces, and just finished talking about how to deal with one of the main issues that we've found...
The current mechanism for integration testing with CircleCI is to run the full `tedana` pipeline and then compare the content of the output files to previously generated files using [`np.allclose`](https://docs.scipy.org/doc/numpy-1.14.0/reference/generated/numpy.allclose.html)....
Closes #752. Adds the ability to include an overlay to a plotted `OrthoSlicer3D` object using the `set_overlay` method. Still very much a WIP (hence the draft PR!). To Do: -...
While looking at #833 I noticed that neither `PARRECArrayProxy` nor `MincImageArrayProxy` subclass `ArrayProxy` despite there being considerable overlap in their functionality and structure. It seems like it would be reasonable...
There was some talk here at the hackathon about trying to splice the atlases out of the current repository and make them into their own repository, which could serve as...
## The issue In addition to the MNI coordinates of each sample, the Allen Institute provides a detailed ontology of the brain structure each sample was ostensibly taken from in...
## The issue `abagen` currently does a lot of leg work for going from the microarray expression data obtained via the AHBA to parcellated expression data. But, after that, things...
## The issue As Arnatkevičiūte et al., 2019 pointed out in their manuscript, some of the probes in the AHBA data were incorrectly (or not) annotated to genes. Since the...
## The issue As of #105 we have some vastly improved contributing guidelines! To help smooth out the contribution process even more it would be great to include [issue and...
## The issue The `abagen.mouse` module provides some functionality for making Pythonic queries to the [Allen API](http://help.brain-map.org/display/api/Allen+Brain+Atlas+API). For example, to get gene expression data for Prodynorphin from the anterior cingulate...