rkdover

The log is output as seen in #227, with a length of 386 lines.

Hi, and thank you for your comment @AngieHinrichs. That makes sense, though I have managed to get output for far larger runs! Maybe some error handling might still be useful?...

I also had this option but the makefile didn't fail until the second mention of python with a `python is not recognized as a command` error. Fixed it by creating...

> You should have said that from the beginning, your issues are with docker, and how a container works, it has a base image, you can change settings in the...

I'm also having this issue in a debian docker container. The following log: ``` CCLD test/generate_test_advanced.exe ./.libs/libcloog-isl.a(libcloog_isl_la-domain.o):domain.c:(.text+0x11d7): undefined reference to 'isl_set_get_basic_set_list' ./.libs/libcloog-isl.a(libcloog_isl_la-domain.o):domain.c:(.text+0x126e): undefined reference to 'isl_set_get_basic_set_list' ./.libs/libcloog-isl.a(libcloog_isl_la-domain.o):domain.c:(.text+0x172e): undefined reference to...

I edited the makefile itself, the CFLAGS variable. Here's the actual terminal output of the compiler call: ``` x86_64-w64-mingw32.static-g++ -o src/nanopolish_call_methylation.o -c -g -O3 -std=gnu++11 -fopenmp -fsigned-char -D_FILE_OFFSET_BITS=64 -I./htslib -I./minimap2...

I've attempted to build a few more packages and am also missing `mmap`, `munmap`, `__imp_closesocket`, `fdatasync`, `getline`, `pread`, `drand48` to name a few. It seems like all of these are...

I'm noticing this too. Running 4.0.3 from the lscr.io image with the flood-for-transmission web-ui. The files seem to be downloaded though, so I can't make sense of it. Verifying local...

I have this issue as well, unsure of how to resolve it.

You know, going back to the last human commit of that file, it still throws the same error. I wonder if there's some dbuser config you need to do manually...