rjsorr
rjsorr
Hi can you simply provide a command that will give the lowest memory usage? I just want a simple/basic "no thrills" assembly (it will be used as input for another...
Hi, I want to run fixstart to start from the coi gene of the mitochondria. I have provided 40 coi genes in nucleotide format with a broad representation from my...
I'm considering using this tool, but before I use time downloading, installing, learning, running and interpreting I would like to know if it suits my goal? Basically I want to...
Hi I'm wondering as to the compatability of ganon (classify/report) output with recentrifuge (https://github.com/khyox/recentrifuge/wiki/Running-recentrifuge-for-a-generic-classifier)? I need to remove contaminant reads from the dataset and for a person who doesn't use...
I am running ganon (build at present) through a remote connection to a server so I don't always have possibilty to see the screen log. Sometimes the program exits and...
Hi @khyox, I'm trying to understand/interpret the log file so as I can remove contaminats manually based on taxonids. I would like to remove those that have been assigned as...
Hi @khyox, I am wondering what options I need to use to get an abundace table as ouput if I want to downstream process in another program (e.g. R)? for...
Hi, I'm running recentrifuge with kraken2 with the main goal being removal of contaminants and for this I have negative control(s). However, what I'm seeing in my results is that...
Pleae add an option for -t (threshold) as perecent/fraction instead of read number. read number i only useful if all datasets are the same size, which they aren't. For example...
Hi, is it possible to change font sizes? for the title, for the size, for the size on the circle, and for the key. cheers