ritikakundra

# What? Fix # . Cancer studies updated in this pull request: - a - . # checks For all pull requests: - [ ] Passes validation For a new...

HTAN Datasets to Curate

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Listed are the HTAN manuscripts we should curate for cBioPortal: - [x] -An omic and multidimensional spatial atlas from serial biopsies of an evolving metastatic breast cancer (https://pubmed.ncbi.nlm.nih.gov/35243422/) - [...

Ally et al. Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma

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https://www.sciencedirect.com/science/article/pii/S0092867417306396?via%3Dihub Please keep this checklist for curation of a new study. - [ ] [create an issue on datahub](https://github.com/cBioPortal/datahub/issues/new) before curating a study (one issue per study) and copy this...

Missing PMIDs in the Public portal

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Studies missing PMIDs: https://docs.google.com/spreadsheets/d/15uizd1KTvxPZNo9HarRXjw5T78JrfLiDRsaw14Xp5E4/edit?usp=sharing

UCSF glioma study: complete status info for all patients

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@tmazor mentioned that the paper has status info for all patients. We are missing that info for 2. Data is provided in supp file. https://www.cbioportal.org/study/summary?id=lgg_ucsf_2014

Curate Pediatric pancancer PCGP study

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https://xenabrowser.net/datapages/?cohort=St%20Jude%20PCGP%20pan-cancer&removeHub=https%3A%2F%2Fxena.treehouse.gi.ucsc.edu%3A443

 These are years but being treated as ages and getting bucketed into >18 and >89

[BUG]Treatment is showing up in two different cases

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For the chord study https://www.cbioportal.org/study/summary?id=msk_chord_2024 The data has Treatment in the timeline file but the frontend shows it in two cases. Same for all upper case events.

I have mimicked the BMI file to make the data show up as line chart but not been able to. https://triage.cbioportal.mskcc.org/patient?studyId=demo_msk_2025&caseId=P-0015921-TEST#navCaseIds=demo_msk_2025:P-0015921,demo_msk_2025:P-0015921-TEST Data files are here https://github.mskcc.org/knowledgesystems/private/tree/master/automation_tool_datasets/demo_msk_2025 How to modify data?