Ruth Isserlin

In the single dataset analysis the border colour is dark red and can be confusing to people who used an older version of the app. It would be better to...

Issue from Uros in Emili lab I have RNAseq data and phospho data and I want to create a multi dataset EM with both results but the power in RNAseq...

Add tutorial or documentation outlining how to make the network in this publication - How to use multiple datasets and how best to visualize them. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4712639/

Update the read the docs tutorial to use updated GSEA data

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GSEA changed the format of their files. If users try and run gsea with the data and then go through the tutorial EM won't recognize their files. This might be...

EnrichmentMap - show in pathway commons Functionality - Better documentation needed

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Hard to figure out what is happening when you click on the "EnrichmentMap - show in pathway commons Functionality" in the network vs. in the heatmap. From playing around with...

Not sure if this is a possibility but similiar to what STRING does when "EnrichmentMap - show in pathway commons Functionality" is clicked bring up input panel that shows: *...

the over and under expression used to colour the nodes are specific to the query as opposed to the dataset so if a given geneset has a max expression of...

When you click on "EnrichmentMap - show in pathway commons Functionality" and you don't have expression data (you only have a ranked list for example) then pathway commons just keeps...

Build an EM using cyrest with edb directory and rank file creates an EM where the ranks are messed up. In the supplied session file I have created the EM...

Since David has recently been updated and many people use David as their enrichment of choice need to update it. David results should have the visual style label set to...