richard-burhans

If you use conda, you can install SegAlign using my [bioconda](https://bioconda.github.io/) recipe. You would use a command like the following: `conda create --name segalign --channel conda-forge --channel bioconda --channel defaults...

If you use conda, you can install SegAlign using my [bioconda](https://bioconda.github.io/) recipe. You would use a command like the following: `conda create --name segalign --channel conda-forge --channel bioconda --channel defaults...

If anyone else is having this issue, my workaround is to set the `OMP_THREAD_LIMIT` environment variable before running SegAlign as documented [here](https://www.gnu.org/software/coreutils/manual/html_node/nproc-invocation.html)

> This is with [d1a73a0](https://github.com/gsneha26/SegAlign/commit/d1a73a0c9169d5517c9316d9bdc68fd52f63e885) on a ubuntu 18.04 p3.16xlarge AWS instance > > It appears to work with [d5fd293](https://github.com/gsneha26/SegAlign/commit/d5fd29300b8c04f1372c96b5eb11f015d9a1a100). So it's definitely a regression related to changes this June...

Did you happen to pass SegAlign the `--scoring` option? If so, my [PR](https://github.com/gsneha26/SegAlign/pull/64) should fix this issue.

@bioconda/core Please advise. It looks like I'm triggering the version_constraints_missing_whitespace check: https://dev.azure.com/bioconda/bioconda-recipes/_build/results?buildId=72098&view=logs&j=eb1ca712-fec5-5d93-deb0-40983fe61f2f&t=c9ebc308-e058-58af-a4f4-866fa7649dbb

@BiocondaBot please add label

@pditommaso When you get a chance, could you have someone review/merge this PR? Thanks!

> As of version 24.07.x, Nextflow does not use Capsule anymore, therefore this is not needed. Any word on when 24.07.x will get a stable release? I can patch by...

I start with NCBI's docker image from dockerhub and create a new one which includes an installation of Nexflow. The augmented container is uploaded to quay.io. The strategy is to...