Richard A. Schäfer comments

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                                            Richard A. Schäfer

Probably not a bug: missing font

Thanks. This makes my day!

Workflow defines configfile config/config.yml but it is not present or accessible.

Hi, have you solved this? Run into the same issue

Workflow defines configfile config/config.yml but it is not present or accessible.

I used the --configfile option to explicitly define the config file: args: '--lint --configfile .tests/integration/config_basic/config.yaml' works with this

IndexError when running spladder

Has anyone resolved this? I have it both on small datasets and the whole BAM file. I discovered that the problem occurs mainly when aligning with STAR, but not when...

IndexError when running spladder

So this basiclally means that no output can be generated? Is there a way to generate normal normal even when no output is going to be generated?

Index Error during build step

Hi, could you resolve this?

Empty reads and sfs file

Hi, I'm kinda having the same problem. Testdata works fine. But not my PacBio dataset. Followed the snakefile script. Smoothed BAM is sorted and indexed. As I understand, this is...

Empty reads and sfs file

Hi, sorry for the late reply. This was a problem with my data. However, now it runs through but there is no .vcf file generated. What am I missing? Thanks...

Intersect discrepancies between Default and Streamed Call

Thanks for the quick response. That makes sense. It still works in regular mode, and it's fast. I was just wondering how fast 'gia' can be for this kind of...