Bob Dolin

Does or can Vt provide a 'compose_blocksub' feature?

1

Greetings, we have a number of VCF files generated by non-MNV aware callers, but that do include phased genotypes and phase sets. Does (or can) Vt include a utility to...

How to deal with conflicting INFO field names

1

Thank you for SnpSift, what a powerful useful program! I'm new to SnpSift, and have a basic question - the VCF file I'm starting with already has an INFO.AF field....

add vcf2fhir sample_position parameter

update code system: http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/sequence-phase-relationship-cs

Searching for variants in Alt contigs

2

Need to decide if this is something we should support. If, for instance, you are looking for HLA variants, you might need to search across all HLA Alt contigs. If,...

Conversion method should return the converted data, and rely on another method to write data onto a file

3

Currently `vcf2fhir` converts and exports the HL7 FHIR format data to a json file. The converted json data for all the records exists in memory till it is exported in...

Ethan's GVCF branch