revolvefire

- [ ] Additional function parameters / changed functionality / changed defaults? - [ ] New analysis tool: A simple analysis tool you have been using and are missing in...

Q: multi sample comparison (scATAC)

1

Hi @taoliu Thanks for the wonderful tool! I've been trying to use the tool (MACS2) for my ATAC data. I have multiple scATAC samples and I would love to compare...

ATAC tutorial

9

Congratulations on the wonderful-looking update on VIA. This is my first time trying to use VIA (or StaVia), and it seems like the tutorial for [scATAC-seq Hematopoiesis] link is not...

A question regarding augmenting HVG with marcopolo

1

First of all, thank you for the wonderful tool. I have been working on multiple samples from different developmental time points and was hoping that MarcoPolo could cluster out some...

Visium HD support

6

Thanks for the wonderful tool. Would there be a plan to support Visium HD anytime soon? Thanks!

Using different latent space and knn for milo analysis

2

Thanks for the wonderful tool! I was wondering whether it would be okay to perform MILO analysis based on a different latent space and KNN than those used for building...