reubenthomas

zinbAIC, zinbBIC functions seems to have got the rows and columns of the data matrix switched

1

Hi Davide, I looked at the code for the functions zinbAIC and zinbBIC. It seems like the rows and columns are switched in the if function: if ((nSamples(model) != nrow(x))|(nFeatures(model)...

limma-voom implementation results in more false positives than expected

4

Hello, This is directly related to [issue 119](https://github.com/HelenaLC/muscat/issues/119). We evaluated muscat's implementation of limma-voom. It seems it ignores the observation weights from voom and solely uses weights for each sample...

bcftools version

2

Hi, The [installation page](https://github.com/keoughkath/AlleleAnalyzer/wiki/Install-AlleleAnalyzer-and-its-requirements) suggests we need bcftools version number at least 1.5, whereas the [latest release](https://github.com/samtools/bcftools/releases) of bcftools appears to be 1.16. Was the requirement version 1.5 meant to...