Philipp Resl

Hi everyone, very interesting discussion going on here. I have also been using funannotate in a snakemake pipeline and had problems with temp directories at some point. For me this...

Hi everyone, I also spent some time on creating a Docker/Singularity container for funannotate. It is available here: `https://github.com/reslp/funannotate-docker`. I have been using it quite a bit lately and it...

Which funannotate image are you using @Xueliang24? The one I created does not include eggnog mapper or GeneMark so @hyphaltip is correct. However I don't think that this would cause...

Hi, thank you for your quick reply! There is no difference in the output of the two commands on the different hosts. I should have mentioned that already in my...

Hi, This is getting more and more mysterious. I just tried it with several files and they all failed on my mac. Then I downloaded an Aspergillus genome from NCBI...

Thank you, I just tried your script and it did not give any output, so it does not seem to find any problematic lines. I uploaded the problematic file I...

Hi, yes we definitely have plans to include more approaches to detect single copy orthologs. However currrently there is no timeframe when this will happen. compleasm is on our list...

Thank you for the kind words and your suggestion Deyuan. This is definitely something we plan to add in a future version.