Ryan Johnson

icon indicating a website link http://remerjohnson.github.io/ icon indicating an email [email protected]

icon company AbbVie icon location Syracuse, NY icon location Librarian, data analyst, and data scientist. Specializing in metadata, ontologies, and linked data issues.

Results 2 issues of Ryan Johnson

Cannot render subgraphs using GraphRenderer

Following along with [this notebook](https://github.com/biolink/ontobio/blob/master/notebooks/Wikidata_Ontology.ipynb) for rendering subgraphs using GraphRenderer, when running: ```python nodes = ont.traverse_nodes(qids, up=False, down=True) from ontobio.io.ontol_renderers import GraphRenderer w = GraphRenderer.create('tree') w.write_subgraph(ont, nodes, query_ids=qids) ``` I...

How to map 'reserved' Neosemantics properties?

Hello. I currently map properties from an ontology using the documentation, so e.g., "myont:has_package" becomes "HAS_PACKAGES" in Neo4j. However, how would I do the same mapping for the 'inherent' Neo4j...