Dmitry Repchevsky

Pass the Document to the custom AttributConverter when converting att…

3

…ribute is not primitive type. Currently the enclosed value is passed to the converter, what is good for the primitive types, but in a case of the entity a list...

Align Jakarta NoSQL and Jakarta JSON Binding supported types.

3

Hello, I am interested in using jnosql Java classes as a jsonb ones to be directly used by JAX-RS endpoints. Both uses similar ways to provide additional types support (adapter...

Ontology Resource object weird properties names

4

Hello, Although not an issue, but rather comment. The [beaconFilteringTermsResults.json](https://github.com/ga4gh-beacon/beacon-v2/blob/main/framework/json/responses/sections/beaconFilteringTermsResults.json) Resource object has two bad-named properties: "iriPrefix" - is essentially the "namespace" - the default ontology namespace. "nameSpacePrefix" - which...

Endpoint.singleEntryUrl must be "uri-template" not "uri"

3

Hello, In the [beaconMapResponse](https://github.com/ga4gh-beacon/beacon-v2/blob/main/framework/json/responses/beaconMapResponse.json) (/map) there are some endpoint URLs that are defined as `"format": "uri"` while what is actually put / expected `"format": "uri-template"`. For instance, [Endpoint.singleEntryUrl](https://github.com/ga4gh-beacon/beacon-v2/blob/d2be0e2fcc4cbbaebb355caaf8a20af25504a687/framework/json/configuration/beaconMapSchema.json#L35) expects the...

invalid CURIE example

1

Hello, In the HandoverType example [beaconCommonComponents.json#HandoverType](https://github.com/ga4gh-beacon/beacon-v2/blob/d2be0e2fcc4cbbaebb355caaf8a20af25504a687/framework/json/common/beaconCommonComponents.json#L121C21-L121C36) one of the "id" has a value "CUSTOM" which is not a **qualified** CURIE. Current CURIE pattern : [beaconCommonComponents.json#CURIE](https://github.com/ga4gh-beacon/beacon-v2/blob/d2be0e2fcc4cbbaebb355caaf8a20af25504a687/framework/json/common/beaconCommonComponents.json#L56C25-L56C38) defines CURIE being **qualified** :...

meaningless entryTypeDefinition.aCollectionOf property defiition

7

Hi all, There is invalid [entryTypeDefinition.aCollectionOf](https://github.com/ga4gh-beacon/beacon-v2/blob/7c64fdf3b18c36cfa7279d610982224e1bf48c4d/framework/json/configuration/entryTypeDefinition.json#L10) property definition in the spec. ```json "aCollectionOf": { "description": "If the entry type is a collection of other entry types, (e.g. a Dataset is...

for templates the format must be "uri-template".

6

in the [beaconMapSchema.json](https://github.com/ga4gh-beacon/beacon-v2/blob/main/framework/json/configuration/beaconMapSchema.json) some URLs are templates and must have the uri-template" format (#103).

received filters in summary to object

10

There is an incoherence formats of filters submitted to the query and reported to be submitted: ["request summary"](https://github.com/redmitry/beacon-v2/blob/e8725f8930051fe5cd3c893233fd66b74c5713b2/framework/json/responses/sections/beaconReceivedRequestSummary.json#L9C15-L9C15) vs ["submitted"](https://github.com/redmitry/beacon-v2/blob/e8725f8930051fe5cd3c893233fd66b74c5713b2/framework/json/requests/beaconRequestBody.json#L8). This pull request is to use the same filteringTerms format...

Hello, According the specification: >There are two ways how to register JsonbSerializer/JsonbDeserializer: > 1. Using JsonbConfig::withSerializers/ JsonbConfig::withDeserializers method; > 2. Annotating a type with JsonbSerializer/JsonbDeserializer annotation. The annotation is the...

Hello. For the custom user JsonbDeserializer(s) it would be great to fix cycle checking: [UserDefinedDeserializer.java](https://github.com/eclipse-ee4j/yasson/blob/a5b6943db1cf24e6c34687899c487750dd3fa937/src/main/java/org/eclipse/yasson/internal/deserializer/UserDefinedDeserializer.java#L33). The code below fails, (`DefaultEntity implements MyEntityInterface`) and we can't specify concrete type. ```java @Override...