Rebee Penrice-Randal comments

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                                            Rebee Penrice-Randal

Can't run updateTaxonomy.sh and updateAccessions.sh even use the latest version 2.7.1

> had the same issue: used this workaround > > ``` > #create krona_env with krona > conda create -n krona_env krona -y > conda activate krona_env > > #...

run wont start. output is in same directory as data

Hi @Psy-Fer - I am having this problem too - trying to play with our data that automatically gets transferred to our server from our runs. But we only take...

run wont start. output is in same directory as data

@Psy-Fer no not at all. Just having a look atm!! Thank you!

Customizing pipeline for cDNA-PCR runs rather than gDNA amplicons.

Hi Callum - did you ever find anything? :) > I wanted to ask if this pipeline could be altered slightly to run with cDNA-PCR libraries. We have custom UMIs...

antisense classification for ONT direct RNAseq data

This would be really useful... any ideas on when this will be released?

antisense classification for ONT direct RNAseq data

> @rebeelouise > > > > Unfortunately, I am the only one currently working on IsoQuant. It's very hard to predict current timeline considering other ongoing research projects. I really...

Handling viral gff files

> Dear @rebeelouise > > > > In the first message gffutils detect identical IDs in your GFF: > > `ValueError: Duplicate ID cds-NP_073549.1` > > > > Duplicating IDs,...

Handling viral gff files

> By the way, if you could, is it possible to briefly state what data are you using and what kind of analysis you are aiming at? I am not...