marcin p. joachimiak

And a better diff example between beta and previous release -- 5 vs 46 phenotypes: https://beta.monarchinitiative.org/gene/HGNC:3413#phenotype https://monarchinitiative.org/gene/HGNC:3413#phenotypes

Good questions, thanks! So it looks like we are downloading chebi.owl: http://purl.obolibrary.org/obo/chebi.owl And then converting to json using ROBOT: https://github.com/Knowledge-Graph-Hub/kg-microbe/blob/5886197d5fa00ab4c2e6af09dd9f5a3bc453743f/kg_microbe/transform_utils/traits/traits.py#L85 Calling method here: https://github.com/Knowledge-Graph-Hub/kg-microbe/blob/5886197d5fa00ab4c2e6af09dd9f5a3bc453743f/kg_microbe/utils/robot_utils.py#L27 And here is the line for...

@deepakunni3 thanks -- turns out some of the GeneWeaver gene sets use gene symbols. Is that also something that could be deferred to time of merge? Either way I need...

I second the server timeout settings request:)

I'm going to sign up for this one, assuming no other takers or higher priority data. Along the way I can also generate biclusters. I also have a biclustering collaborator...

Interesting discussion, I can harp here on time modeling as well :) But just getting into that topic, discussion going on in another thread -- but minimally storing the tweet...

Here is another potentially related error: can't find key in YAML: 'pos_validation' can't find key in YAML: 'neg_validation' Traceback (most recent call last): File "/global/scratch/marcin/N2V/NEAT/venv/bin/neat", line 10, in sys.exit(cli()) File...

@sierra-moxon thanks for looking into this! Part_of or occurs_in is not quite it, that could work for habitat/ecosystem though but maybe that is already covered in biolink? But those are...

Here are my current matplotlib versions: matplotlib 3.8.0 matplotlib-inline 0.1.6 I see there is now a newer 3.8.1, I can try that in case it helps.

I confirmed that the same errors occurs for matplotlib 3.8.1 matplotlib-inline 0.1.6