reactome2py
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reactome
python client for reactome content, analysis, and human functional protein interactions (FI) services api calls.
Reactome2py
| CI | Branch | Build Status |
|---|---|---|
| Travis | master |  |
Python client for Reactome content and analysis services API calls.
Installation
-
PyPI install using pip
(sudo) pip install reactome2py -
from source
git clone repo cd reactome2py python setup.py install -
Dockerfile
(sudo) docker build -t <tag-name>:latest . (sudo) docker run -it --rm <tag-name>:latest
reactome2py Jupyter notebook use-case examples
demo folder holds jupyter notebooks to show use-cases
Try it on the fly with google coolab - NOTE: click on folder/file icon to find results generated via jupyter notebook.
API Documentation and json structures (Model section)
- Pathway Analysis Service: https://reactome.org/AnalysisService/#/
- Content Service: https://reactome.org/ContentService/#/
Reactome EBI Training Course
https://www.ebi.ac.uk/training-beta/online/courses/reactome-tools-for-analysing-biological-pathways/
Reactome Pathway Browser Tour
This video is useful in understanding how to fully use and interpret Reactome pathway browser features.
https://www.youtube.com/watch?v=-skixrvI4nU
In depth user guides are available at: https://reactome.org/userguide
reactome