Ricardo Righetto
Ricardo Righetto
Dear RELION team, I just did a fresh install of RELION-5. To test the tomography capabilities, I wanted to import a `tomograms.star` file and some particle coordinates that I have...
Hi, When doing `relion_reconstruct` with RELION 4.0.1 on subtmograms reconstructed by Warp, which are accompanied by a CTF volume, the program seems to skip the CTF correction. The command line...
Hi, When reconstructing pseudo-subtomograms in RELION-4.0 we have the option to write the output in `float16`, which is great for saving space. However, in `relion_refine` when we choose to copy...
(separate topic, separate issue) Hi again Lorenzo, If I may suggest, would it be possible to make `blik` display the tomogram in the same orientation as IMOD and ChimeraX, at...
I was confused thinking that the IsoNet protocol was copying my input tomograms. Turns out that they were actually hard links, which is good since the data does not get...
The protocol gives the following error at the subtomogram extraction step: ``` ######Isonet starts extracting subtomograms###### 02-28 14:52:38, WARNING [isonet.py:295] subtomo directory exists, the current directory will be overwritten Extract...
First of all, thanks a lot for this really useful ChimeraX plugin! I've added support for reading STOPGAP v0.7.1 (https://github.com/williamnwan/STOPGAP) motivelists in STAR format: https://github.com/rdrighetto/ArtiaX/commit/eb6d353b5dd118f8995a9938571dc44ebc61853c **Known issues:** - Currently only...
Especially when you are processing many jobs in parallel, and a huge library that takes minutes to load, and you hit the "close" button by accident #truestory
We noted some issues when comparing MotionCor2 in 4k and 8k inputs. In the Library, the parameters "Drift", "MaxDrift", "Deceleration" are the double in 8k than in 4k and should...
Whenever the user interrupts a script by clicking the "Stop" button, it should automatically kill all programs called by that script (e.g. Python scripts, FREALIGN instances). I know this can...