Rayan Chikhi
Rayan Chikhi
Hi Ryan, Thanks for your response and I'm glad you're on board with implementing it. I'll let Samarth (who is the developer of the Falcon2fastg projet I'm involved with --...
Some formatting issues with your response :)
Hi Ryan, Thanks for considering it. Yes, redrawing the graph will do for now..
thanks for the response! Maybe the CI's like Travis/CircleCI/Github actions?
I think, but @malfoy might add more info, that blight is supposed to be used as a library and not built standalone
For reference, here is the original genome structure plot with SARS-Cov-2 Pfam HMM, and using the `--cut_ga` option of hmmer3. 
Of note, the above structure plot had a bug. When `hmmsearch` reported multiple hits for a domain, I had kept only the rightmost one. Now, I keep only the longest...
Here is a different plot made by fixing the bug, and also substituting `--cut_ga` with `--max -E 0.01`. (Epsy accessions were reordered arbitrarily, sorry about that). Observe that more domains...
Now, here is a genome structure plot where I plot two things: the SARS-Cov-2 Pfam HMM (same plot as above) and also the Nido-HMM annotations (red domains). Some nido hits...