Dr. Sven Steffen Becker

Results 29 comments of Dr. Sven Steffen Becker

@maucoen @asanohideo Did you solve this issue? I am currently experiencing the same behaviour.

Huge thumbs up for the caching-on-the-fly 👍 This would greatly simplify Multi-GPU workflows, since the distributed batch sampler only uses a subset of data on each GPU. Further, caching all...

Thank you! In theory I would like to support all mentioned use-cases. However, the DICOM standard is so flexible that it is not feasible to implement a solution on my...

I don't have a 2D+t series at hand, but I would imagine that SimpleITK loads the series with `GetSize()==(156,192,25)` and `GetDepth()==25`? That would be already a problem for me, because...

Thank you for reporting. In your case it would be a multi-label scenario, where one voxel can have multiple labels. Multi-class is usually defined as a single label per voxel....

Sure, this is a workaround for how pydicom-seg expects the data. But I doubt that the generated SEG file will work in e.g. 3D Slicer or OHIF Viewer. The problem...

Interesting. That is actually really easy, since [trimesh](https://github.com/mikedh/trimesh) supports it out of the box. Instead of performing the voxelization you can save the image to one of the supported mesh...

Unfortunately, this is currently not possible. The `MultiClassWriter` only supports serializing a single `sitk.Image`, which is a voxel cube with only one origin and one orientation matrix. How would you...

It would be possible to define the `PlaneOrientationSequence>ImageOrientationPatient` in `PerFrameFunctionalGroupsSequence`. The problem is I don't know how I should detect this orientation change and match slices to DICOM files if...

Sorry for the long delay! So you are converting segmentation images into DICOM and want to read it with `pydicom-seg`, right? Are you actually creating a DICOM-SEG document oder is...