rayajallad

Results 4 issues of rayajallad

count matrix outputted with all zeros

Hello, I am trying to run the pipeline but the count matrix has all zeros for everything each time. Another issue is that I specify 'gene_id' for annotations but the...

Manually Adding ChIP-Seq Data

Hey there! I had originally used pyscenic for C. elegans data using my single cell RNA seq data. However, I want to incorporate my lab's ChIP-Seq data that hasn't been...

Empty Outputs

When I try and run prune2df(), it creates the dataframe, but doesn't output any values. ``` df = prune2df(dbs, modules, MOTIF_ANNOTATIONS_FNAME) df.head() Enrichment AUC NES MotifSimilarityQvalue OrthologousIdentity Annotation Context TargetGenes...

How to incorporate personal ChIP-Seq Data Into Pyscenic?

Hey there! I had originally used pyscenic for C. elegans data using my single cell RNA seq data. However, I want to incorporate my lab's ChIP-Seq data that hasn't been...