raquelsofi

Hi i'm having similar issue, could you identify which jar file works to run the hicpro2juicebox.sh utility? On my situation it creates the Temp folder and then crashes with issue...

Hi, I'm running hicPCA with the extraTrack option to assign eigenvector signal based on gene density with this command: hicPCA \ -m HiCExplorer_outputs/BCRpos_neg_5000/hicMergeMatrixBins/BCRpos_raw_200kb_normICEcorrected.h5 \ -o HiCExplorer_outputs/BCRpos_neg_5000/Compartments/BCRpos_raw_200kb_normICEcorrected_pca1_genecorrected.bedgraph HiCExplorer_outputs/BCRpos_neg_5000/Compartments/BCRpos_raw_200kb_normICEcorrected_pca2_genecorrected.bedgraph \ --format bedgraph...