raquellewei

Using CAMI format input for metagenome_from_profile.py

3

Hi, I was trying to run metagenome_from_profile.py using a .profile input file as the manual says it accepts either biom format or CAMI format. However, I received this error message...

rendering failed when exporting to pdf

3

Multiple columns were replaced by horizontal lines when exported to PDF

Ran into this error in coverage.py: `coverage.py", line 131, in _processBam bamfile = pysam.Samfile(bamFile, 'rb') NameError: name 'pysam' is not defined` Adding `import pysam` right in front of this line...