Ramtin Zargari Marandi, PhD

validity (QC) of prediction files based on a custom reference database

2

Quick question: The resulting prediction file using Kaiju to predict reference genomes of the reads in paired-end FASTQ files includes the taxa IDs from the reference database for some reads...

failed prediction only in some samples

2

I'm using a docker container with TF1.15 to run DeepMicrobes. I know it might not have been tested using TF1.15 but that is the compatible one with my platform. It...

running DeepMicrobes in RHEL 8.4

5

Hi I cannot run the example prediction task on a server with red hat 8.4 as OS. When I run it I get this error: E tensorflow/stream_executor/cuda/cuda_blas.cc:647] failed to run...

problem running the example tfrec conversion on Windows Subsystem for Linux WSL and likewise on docker

7

Hi, I installed DeepMicrobes following the provided [guide ](https://github.com/MicrobeLab/DeepMicrobes/blob/master/document/install.md) but did not have any success at running the tfrec_predict_kmer for the provided example file. Is there any solution to this?...

Different prediction results for the same fastq files

2

Hi Qiaoxing, I used DeepMicrobes for species prediction in a system with GPU and a system without GPU (only CPUs). Surprisingly, predicted species are different for the same fastq samples....