ramongallego

[FR] Allow knit with parameters to browse to a folder

12

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Limiting the search to the first n characters

2

Hi there, I was wondering if there is a way of limiting the search for adapters to the first n characters (or the last n characters) of each sequence. I...

Banzai without secondary indices

4

Seems like we run into an issue if you are not using secondary indices, as you need them to generate ID_COMBO in line 268 awk: illegal field $(), name "COLNUM2"...

Using compressed files as raw data

4

When using .gz or any other compressed fastq files as input, the script successfully find the zipped files and decompresses the first one, but then fails to use it. The...

Hi there, kraken2-build download searches for the fasta file of the particular db one wants to download. From April'24, NCBI only provides the fasta file for a few dbs, (Nt...

Hi there, I am using Rebaler for the first time, trying it on a Google Colab script. the script installs minimap2, racon, biopython and Rebaler. The installation fails but I...

The option `gnuplotTested=true` is no longer valid on latest versions of canu, as noted by @ilnamkang

Feature request: control info-file column separator

5

I use the info-file quite often, either with awk one liners or importing the file in R. I have been using them with Illumina data, with great success. Now I...

Installation incompatibilities

2

Hello, I am trying to install deblur in a server running Ubuntu server 5.15.0-131. After running `conda create -n deblurenv python=3.8 numpy ` and activating the venv ` conda activate...