Rahul Vivek Rane

icon company Commonwealth Scientific and Industrial Research Organisation, Australia icon location Melbourne icon location algorithm & platform development for bioinformatics and AI

Results 4 comments of Rahul Vivek Rane

Disable FASTA and FASTA of all hits

Hi Thanks for that tip @enuggetry .. I did try that with the git clone and run using `bundle exec bin/sequenceserver -D` - but I still get the options to...

Additional species

Thanks for this Michael. We would be more than happy to provide refseq-like BAM's and GFF's where needed for testing and debugging! Very keen to see how you go! Cheers...

Finilizing :tail: +: invalid number of bytes

Hi Olga, I am facing the same problem. However in my case, the final.fasta is made properly, where as the FINAL.fasta terminates prematurely after 1 chromosome and spits out the...

Finilizing :tail: +: invalid number of bytes

Not sure if this helps - but managed to track it down to the following line in `finalize-output.sh` > bash ${pipeline}/finalize/remove-N-overhangs-from-asm.sh ${cprops} ${asm} ${fasta} >> ${pipeline}/edit/edit-fasta-according-to-new-cprops.awk The no_overhangs.fasta generated here...