RQ

Subscript out of bounds - Running parameter sweep

4

I am using Seurat version 5.0.1 and DoubletFinder_2.0.3 and encountering this error. Do you have any guides regarding this? sweep.res.list_data_all

I have two codex images per patient (single cell resolution) and one visum image (spot based resolution). Can I align them sing STalign?

Reader does not support cell segmentation of visium hd got after using latest spaceranger version 4

3

I am using the visiumhd data from the latest spaceranger pipeline that also contain segmented outputs but the reader doesnot support it unfortunately. It just work with bins Is there...

I am performing image registration of multiple rounds of IF images using nucleus channel in wsireg using the rigid parameter map, which currently applies nearest-neighbor interpolation. After registration, I plan...