rafaeltiveron

@bradkovach Editing here, yes, I've updated NVIDIA graphics driver and installed these 3 packages. Reboot the system and now everything is running ok. Thank you

I've the same problem. But server had not been logged to Desktop GUI. After, I've repeated the command and everything is fine now.

Yes. But I didn't explain completely. Using a simple mpiexec command through ssh in server, the term "no protocol specified" disappeared just when GUI interface is active in server, when...

There is using `run_rcorrector.pl`: - `-k 31` - read length 75, for single-end (`-s`) - 36 threads (`-t`) - Kept default other remaining options I've counted unmapped reads to 4...

It seems problem is in "pip2", from Makefile.

A slightly different error for me: ``` Total time = 1.52642s Reported 62 pairwise alignments, 65 HSPs. 17 queries aligned. ERROR Impossible to read /usr/local/bin/Oyster_River/sampledata/assemblies/test.ORP.fasta ``` test.ORP.fasta was not generated.

Yes. I have tested as local user and root. Same issue. All the other files were generated and recorded on that.

I've solved. The problem is on "TPM_FILT = ". It doesn't recognize the input value. You need to fix to "TPM_FILT=". Also, I defined "ifndef TPM_FILT" below what was stated...

So, with these changes, I've got a new error: ``` /usr/local/bin/Oyster_River/oyster.mk transrate STRAND=RF MEM=15 CPU=32 READ1=test.1.fq.gz READ2=test.2.fq.gz RUNOUT=test [ INFO] 2019-08-29 11:34:00 : Loading assembly: /usr/local/bin/Oyster_River/sampledata/assemblies/test.ORP.fasta [ERROR] 2019-08-29 11:34:00 :...

I've substituted awk for gawk. I'll test and tell if it works.