Cheng Quan

Plot multiple celltypes or genes in a single slice

2

Hi, I am trying to plot expression of multiple genes or probability of multiple celltypes in a single slice, as provided by celllocation.  Any suggestions if we want to...

Error methyltrain

4

I downloaded data from https://www.ebi.ac.uk/ena/data/view/PRJEB13021 and want to compile the pipeline. Since the whole dataset is too large, I extract 20-30 files from ecoli R7 data for training (ecoli_er2925.MSssI.timp.100215.fast5, ecoli_er2925.native.timp.110915.fast5,...

Hi, when I run the preprocessing step: `nebula preprocess --bed genotypes.t2t.bed --bam HG002.minimap2.t2t.sorted.bam --workdir tmp --reference chm13v2.0.fa --threads 40` Nebula stop and throw the exception:  I have built the...