qijt123

'WARNING: infer_data failed for target Hsf1' Retry (10/10). Failure caused by ValueError('Cleaned TF matrix is empty, skipping inference of target Hsf1.').

4

Hi, Thank you for a very useful tool. This problem arose when I ran the first step 'Inference of co-expression modules' using pySECNIC, what is the meaning of this warning...

Questions about AUCell's results

1

Thank you for developing such a useful tool. I would like to ask how pySCENIC can obtain the binary result of AUCell, that is, whether regulons is active information? Looking...

Question about parameter selection in scale.factors?

1

When I want to calculate cell interactions in the spatial transcriptome based on Slide-seq v2 technology, how should I choose the two values of spot.diameter and spot in the scale.factors?

How to get information about downstream target genes of ligands and receptors in cell interactions?

2

Hi, Thank you very much for your Omnipath database. Now I have some information about ligands and receptors, but I want to know what are the transcription factors and target...

Question about ligand transport distance

1

Hi, Thank you for a very useful tool, I want to know for a secreted ligand, how is the distance it can travel calculated? Or is the transport distance for...

Thank you so much for developing the tool! I would like to know if in the LR-TF database you collected, are all LR's effects on TF activated? Is it possible...

Questions about the LR-TF database

3

Thank you so much for developing the tool! I would like to know if in the LR-TF database you collected, are all LR's effects on TF activated? Is it possible...

Thank you so much for developing the tool! I would like to know if in the LR-TF database you collected, are all LR's effects on TF activated? Is it possible...