Patrick Tran Van
Patrick Tran Van
Any answers ?
Hi, I have a similar problem despite of using the last commit version: > Number of initial contigs: 546681 Choosing mode: 315 mu_adjusted:319.291063062, sigma_adjusted:55.3128021429, skewness_adjusted:0.680770613239 mode adj: 315 median adj...
Hi, I confirm that I have the last version (or at least the one you mentioned) and still have the error.: > pip list | grep 'mathstats' > mathstats (0.2.5)
Thanks ksahlin for your help but even with the --no_option, I still got the error. Here is my command: `runBESST -c ../assembly/filter/1_Tdi_contig_filtered.fasta -f 1_Tdi_is_350.no_contaminant.bam 1_Tdi_is_550.no_contaminant.bam 1_Tdi_is_700.no_contaminant.bam 1_Tdi_is_3000.no_contaminant.bam 1_Tdi_is_5000.no_contaminant.bam -o output...
Do you know what can cause this error ? is it because too few coverage ?
Last line is: > (250.29167297172077, 5.755742213586912, 0.056298976556232484, 122.89, 679.0, [127, 137, 139, 143, 143], 1002.0, 172.0, 263, 89480.61026514288)
Hi @ksahlin , did you have an opportunity to look at it ? Thanks.
Do I need to polish the HIFI assembly with this ? ``` minimap2 -t16 -ax map-pb -r2k dbg.raw.fa reads.fa.gz | samtools sort -@4 >dbg.bam samtools view -F0x900 dbg.bam | ./wtpoa-cns...
Yes I did set `--n-hap 3` . Look at my command :)
Thanks I will take a look. What about the option `-s` ? is it useless for triploid ?