Po-Ting Lai

Hi @Khyati-Microcrispr, The instructions for predicting new data can be found at https://github.com/ncbi/bert_gt/issues/5#issuecomment-1398044328 The checkpoint can be found at https://github.com/ncbi/bert_gt/issues/6#issuecomment-1631065449 The requirements can be found at https://github.com/ncbi/bert_gt/issues/7#issuecomment-1670113532 Please let me...

Sorry for the late reply. It took me one day to finish 'biored_exp' experiment.

Hi @RickRen-rpr , Please find the [requirements.txt](https://github.com/ncbi/bert_gt/files/12294787/requirements.txt). If you have any problems, please let me know. Thanks. Po-Ting

Thank you very much for reporting the error. I have merged your request.

Hi @dongheechoi , The program can run on GPU as below.  Yes, you should be able to change cuda_visible_devices to the visible GPUs.

Hi @lou-yimin, My apologies for the delayed response. If you are still interested in BioREx but are experiencing this issue. Could you please provide more information about this issue? For...

Hi @dongheechoi , The score that you display is a typed score, and is located in 'out_biorex_results.txt' The score that is in our paper is the binary score, and located...

Hi @dongheechoi , I wanted to clarify a few points regarding BioREx. - We don't put BioREx predictions on the leaderboard. - The 79.6 score (binary relation score) you mentioned...

Hi @Khyati-Microcrispr , Thank you for your interest in BioRED. Input-output files are in the same format as BioRED pubtator files available at https://ftp.ncbi.nlm.nih.gov/pub/lu/BC8-BioRED-track/BC8_BioRED_Subtask1_PubTator.zip. I have tried the configuration you...

Hello @Khyati-Microcrispr, There is an error "error: libdevice not found at ./libdevice.10.bc", and the program fails. This looks like an issue of Cuda set up. Can you confirm that you've...