Juan Antonio Rodríguez

icon company CRG icon location Barcelona/CPH icon location Assistant Professor @ Center for Evolutionary Hologenomics (Copenhagen) GWAS, 3D-genome, ageing, cheese, beers and guitar

Results 3 comments of Juan Antonio Rodríguez

Raw matrix from TADbit API and TADbit tools are different.

Hi David! Yes, this is basically it: I just load a bam containing only the valid pairs on the `bam` variable. ``` hic_data1 = load_hic_data_from_bam(bam, resolution=reso, region=region, ncpus=6) hic_map(hic_data1, normalized=False,...

Tadbit Parse Error

Hi, Not sure if this is solved, but just for future reference, this gets solved if you add the option `--filter_chroms ""` For example, if the name of your chromosomes...

Conda easy-ish installation guide

Dear Jian Ma, Of course, please go ahead! And feel free to modify the recipe to your convenience, or if you think something can be improved. And thank you for...