Paola Benaglio
Paola Benaglio
Thanks for the reply! 1. Yes I copied the commands from the github (https://github.com/r3fang/SnapTools). I thought it was a the alignment.py script because the I got this sort of errors:...
Thank you very much, I have installed your updated package it seems that everything is working now with python 3.6!
Hello @anglixue and @rauldiul ! I am stuck with the same issue with the PBMC reference--- which is weird because the same workflow worked a year ago.... Does anybody have...
Update: it worked when I installed a previous version of Seurat (5.0.1) and Signac (1.12.0), but cannot say why. (Azimuth version always 0.5.0)
Hello! Thanks for the useful discussion! All is very clear. Initially I thought that the main difference would be the keep-dup but after some tests and your suggestion it is...
No Problem, thank you for taking the time to answer all my questions!! Thanks again!
Hi, thank you for getting back to me! Yes I was able in the past to run it correctly on another system and dataset but I cannot share it or...
Thanks for your feedback! I tried running your code using 2 different conda environement and in one (original I used) I have the wrong result and in the other (a...
Yes that was the case: he bad env used an r-bpcells conda install, whereas the good one installed by `remotes::install_github("bnprks/BPCells/r") ` !! I am glad this makes sense to you...