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                                            playerra

Infinite loop: Use of uninitialized value $currGI in numeric lt (<) at mkGottchaTaxTree.pl line 1037.

Hey Frank, Not part of the team there at LANL but I've been wrestling with building a custom db myself the past couple days. So the files for the genbank...

Not a HASH reference at gottcha_db.pl line 1573.

You are correct. Looking back at my mkGottchaTaxTree.log I found: Indexing GIs by TAXID... **Warning: GI "300693042" has no TAXID!** **Warning: GI "409246494" has no TAXID!** **Warning: GI "479208076" has...

Not a HASH reference at gottcha_db.pl line 1573.

So when I check the first GI on ncbi it returns: "Record removed. This RefSeq genome was suppressed because updated RefSeq validation criteria identified problems with the assembly or annotation."...

Not a HASH reference at gottcha_db.pl line 1573.

Paul, thanks for the update. Could you please clarify from what file I need to remove those 300 GIs? Do they need to be removed from the 'genomes.txt' file containing...