pkhoueiry
pkhoueiry
It looks like a path issue (with the path1 that you added). Try running it from within the BioGPT directory.
Two things: 1- The newly created checkpoints directory should be in BioGPT folder, the one you cloned 2- Run the script from the BioGPT folder, again, the one you cloned....
You have to generate it by running the preprocessing (very fast). Check the related page in the example folder: https://github.com/microsoft/BioGPT/tree/main/examples/RE-DTI
In which assay are you looking for your gene? Check the RNA assay. If you are looking at scaled data and in variable gene, you may not find it if...