pixuenan

Try to understand the report column 27 and 29

1

Hi, When I looked at the `report.tsv` file, I found that the sum of the column 29 `smtls_nts_depth` is not equal to column 27 `smtls_total_depth`. May I know why?

The code in the line `316` of `cnv_diagram.js` is as following: ``` yield { start: pos, end: i, state: newState }; ``` It should be changed to: ``` yield {...

In the line `137` of script `cnv_diagram.js`, the code is as following: ``` var maxTextY = Math.max.apply(null, geneTexts.map(l => l.y)) + characterHeight; ``` I changed the code to something like...

High false positive number and x-replacement simulation failure

4

Hello, I'm running ximmer on 15 exome samples from 1000G by docker. Here is my config file ``` title="Test Simulation 15 samples" bam_files=[ "/data/wes/run/20181205/02.bam/HG01200/HG01200_recal.bam", ...... ] target_regions="/data/wes/Ref/bed/SeqCap_EZ_Exome_v3_hg19_capture_targets.bed" simulation_type='downsample' known_cnvs="/data/wes/cnv/00.simulation/15sample_cnv.tsv" samples...

Missing LSB.tsv file of release 1.3

1

Thanks for creating this extraordinary tool. Currently, our lab found a VNTR loci by long read sequencing data, and is really looking forward to validating our finding by genotyping it...