pieterlukasse
pieterlukasse
+1 for The R readline function should, inside IRkernel, use the Jupyter protocol stdin messages to prompt the user for input.
One related question I had was: can I configure different docker images, one for each step? Or am I limited to a single value for `process.container` in the config file?
Ok, I found the answer to my related question above: https://github.com/nextflow-io/nextflow/blob/master/docs/process.rst#container -> the container can be set individually for each "process". Maybe this is what should be done for the...
@nanauat the PR, HER, ER status related fields (and more) are available in the sheet you shared (see screenshot for example). Thanks.  @n1zea144 is there something like a "pancan...
@n1zea144 thanks for the update. The file referenced by @nanauat actually looks quite complete, at least for the test we did: we were able to find 116 triple negative samples...
@sandertan do we have scripts that can help with parsing the new CCLE data?
@jjgao thanks for the update. Yes, we have already defined a data format for drug (or treatment, where treatment is a combination of two or more drugs) profiling. See https://github.com/thehyve/cbioportal/blob/treatment_study_implementation_rebase/docs/File-Formats.md#treatment-data...
@jjgao @ritikakundra any updates on this one?
any updates?
thanks for merging in my proposed changes @rkboyce 👍 You can mark all my comments above as resolved.