PJ

Hi, I'm using Bandage to visualize results generated by [MetaCherchant](https://github.com/ctlab/metacherchant). All is working well, but when I try to run a BLAST search on my results, building the database gives...

Errors when comparing across samples

6

Hi, When I combine MetaPhlan 3 reports with Kraken / Centrifuge ones, I get an error at the across samples plot under the sample tab when clicking a specific taxon...

The number of cores used in parallel processing is no longer set to the max available, but chosen by the user (default is 4). No UI implementation yet (if this...

Invalid patterns evaluated as valid by is.regex()

1

Hi, Let me start by saying I really like your package! Very useful :) However, I found several patterns that throw an error in R (using `stringr::str_detect()`) although they are...

Root directory and relative path issue at runtime

3

Hello, I have been using the Shiny extension in Positron (and VS code) and ran into an issue regarding the root directory at runtime. As outlined in the Shiny documentation,...

## System details: #### Positron and OS details: Positron Version: 2025.05.0 (system setup) build 142 Code - OSS Version: 1.99.0 Commit: 17df8dd67df471d39688fc6cd02e3f23543b4d72 Date: 2025-05-05T15:59:18.321Z Electron: 34.3.2 Chromium: 132.0.6834.210 Node.js: 20.18.3...