Pierre
Thank you for your feedback! Another source pointed out by a colleague: https://community.mrtrix.org/t/dwi-images-with-different-echo-times/5892 @mattcieslak thanks for the note, these two values are defined in the sidecars.
So it seems that the steps would be to: 1. preprocess the dwis separately (with `--separate-all-dwis`) 2. do some kind of normalization: @jdtournier proposes to do a "matching and concatenation...
The only differences are highlighted in the screenshot above, `TotalReadoutTime` is the same for both series.
Also having this issue. I routinely connect to 2 servers via ssh, everything works well with VS Code, but Cursor can only connect to one server. For the other, it...
GE scanners also acquire several directions with b=0 and others
Looking at the code, it seems it uses OpenMP, however setting up `OMP_NUM_THREADS` doesn't seem to have an effect (both inside & outside the container). Is that normal?
also had to update scikit-image from 0.22.0 to 0.25.0 to use `skimage.draw.polygon2mask`
Thanks for the tip! However I can't quite get it to work. Here's the file I created: ```json { "name": "bidsafq", "entities": [ { "name": "algorithm", "pattern": "[_/\\\\]+algo-([a-zA-Z0-9]+)" } ]...
Adding `validate=False` in `BIDSLayout()` didn't change the result: still `[]`... Also I'm not sure that would be the issue, as I see these files if I just call `layout.get()`. Any...
Just checked: it didn't attach the "algo" entity. Do I need to add a `default_path_patterns` in the `afq_bids_config.json`? Right now I only define entities.